PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008635
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NF-YB
Protein Properties Length: 161aa    MW: 17972 Da    PI: 4.8097
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008635genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB33.11.4e-1011107794
      NF-YB   7 flPianvsrimkkvlPanak...is..kdaketvqecvsefisfvt....seasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                +lP + v r++k+ l + ++   is  kd+     e +  fi +++    s ++d c++ kr+ti+++d+l al ++ f + v plkv l+++r  +
  Cla008635  11 ELPKTIVRRVVKEKLSQCSRdqdISvnKDSLLAFCESARIFIHYLSatslSRSNDICNESKRQTIKAEDVLKALEDMEFPELVRPLKVSLNEFRRKN 107
                57888889999998876443222551155555555666779999872223467899*************************************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.0E-2811149IPR009072Histone-fold
PfamPF008084.9E-71184IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.62E-2112125IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MEKKVGAGIE ELPKTIVRRV VKEKLSQCSR DQDISVNKDS LLAFCESARI FIHYLSATSL  60
SRSNDICNES KRQTIKAEDV LKALEDMEFP ELVRPLKVSL NEFRRKNAGK KAAASREKEV  120
KKKRKVEEPT AEGTDGDSND GVGNEDNDEA EDEDEIGASD N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103124RRKNAGKKAAASREKEVKKKRK
2115124REKEVKKKRK
3120125KKKRKV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818421e-74LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132591e-74LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657587.11e-78PREDICTED: DNA polymerase epsilon subunit D isoform X1
TrEMBLA0A0A0KEV71e-74A0A0A0KEV7_CUCSA; Uncharacterized protein
STRINGVIT_06s0080g00460.t011e-54(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118633236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.11e-37nuclear factor Y, subunit B11